Global report contents

1- Overview

2- A. pisum versus D. melanogaster

3- A. gambiae versus D. melanogaster

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1- Overview of homologous sequences

 

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2- Number of hits between A. pisum and D. melanogaster

TblastX between A. pisum contigs versus D. melanogaster chromosomes (threshold 10e-6)

Nb of Ap contigs	17,069
Nb of Ap contigs without hits	12,280
Nb of Ap contigs with a hit	4,789

 

First hit summary:

Hits on all chromosomes Exon only 2,891 Transposable element only 70     Exon + intron 1,596 Exon + intron + Tr_elt 17 Exon + Tr_elt 2     Others 213 Total 4,789

Hits per chromosomes   Exon Tr_elt Intron Others 2L 567 5 259 1 2R 518 14 331 11 3L 597 28 415 7 3R 697 19 296 9 4 24 17 28 1 X 488 6 284 10 Total 2,891 89 1,613 39* * 174 on "Unknown"

Distribution of A. pisum contigs per number of hits on D. melanogaster sequences

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3) Number of hits between A. gambiae and D. melanogaster

TblastX between A. gambiae cDNAs versus D. melanogaster chromosomes (threshold 10e-6)

Nb of Ag cDNAs	14,127
Nb of Ap contigs without hits	3,438
Nb of Ap contigs with a hit	10,689

 

First hit summary:

Hits on all chromosomes Exon only 6,283 Transposable element only 37   Exon + intron 4,163 Exon + intron + Tr_elt 17 Exon + Tr_elt 2   Others 187 Total 10,689

Hits per chromosomes   Exon Tr_elt Intron Others 2L 1206 2 686 5 2R 1189 18 898 30 3L 1221 5 836 12 3R 1712 8 1063 8 4 922 0 650 17 X 33 4 47 1 Total 6283 37 4180 73* * 114 on "Unknown"